Determining energy expenditure in a large seabird using accelerometry.

The trade off between energy gained and expended is the foundation of understanding how, why and when animals perform any activity. Based on the concept that animal movements have an energetic cost, accelerometry is increasingly being used to estimate energy expenditure. However, validation of accelerometry as an accurate proxy for field metabolic rate in free-ranging species is limited. In the present study, Australasian gannets (Morus serrator) from the Pope's Eye colony (38°16'42″S 144°41'48″E), south-eastern Australia, were equipped with GPS and tri-axial accelerometers and dosed with doubly labelled water (DLW) to measure energy expenditure during normal behaviour for 3-5 days. The correlation between daily energy expenditure from the DLW and vectorial dynamic body acceleration (VeDBA) was high for both a simple correlation and activity-specific approaches (R2=0.75 and 0.80, respectively). Varying degrees of success were observed for estimating at-sea metabolic rate from accelerometry when removing time on land using published energy expenditure constants (R2=0.02) or activity-specific approaches (R2=0.42). The predictive capacity of energy expenditure models for total and at-sea periods was improved by the addition of total distance travelled and proportion of the sampling period spent at sea during the night, respectively (R2=0.61-0.82). These results indicate that accelerometry can be used to estimate daily energy expenditure in free-ranging gannets and its accuracy may depend on the inclusion of movement parameters not detected by accelerometry.

Using ecotourism boats for estimating the abundance of a bottlenose dolphin population in south-eastern Australia.

It is challenging to collect robust, long-term datasets to properly monitor the viability and social structure of large, long-lived animals, especially marine mammals. The present study used a unique long-term dataset to investigate the population parameters and social structure of a poorly studied population of bottlenose dolphins (Tursiops sp.) in southern Port Phillip Bay, south-eastern Australia. Photo-identification images have been collected between 2012-2022 both opportunistically and following a protocol by patrons, staff, and volunteers of ecotourism companies using their vessels as platforms. The resulting large dataset was available to be processed through the online platform Flukebook and used in capture recapture models to estimate abundance and demographic parameters. In addition, the social structure of the population and the reproductive parameters were investigated. The marked adult population abundance (45.2 ± 2.7 individuals) was found to be stable over the last decade and the calving rate ranged between 0.06-0.19 new calves per identified individuals per year, while the inter-birth interval was 3.7 ± 0.8 years. Social analysis suggested the population has a fission-fusion structure with no apparent clusters. The stability of the population over the study period suggests no deleterious effect of anthropogenic or environmental factors during the last decade. This study is the outcome of the effort of the ecotourism organisations and the results obtained, along with their similarity to those of other dolphin populations worldwide, highlight the importance of such data sources for long-term information that would otherwise be too expensive or logistically difficult to obtain.

Energetic consequences of prey type in little penguins (Eudyptula minor).

Investigation of foraging decisions can help understand how animals efficiently gather and exploit food. Prey chase and handling times are important aspects of foraging efficiency, influencing the net energy gain derived from a prey item. However, these metrics are often overlooked in studies of foraging behaviour due to the difficulty in observing them. The present study used animal-borne cameras to investigate the type, duration and energetic consequences of predator-prey interactions in little penguins (Eudyptula minor) (n = 32) from two colonies in Bass Strait, south-eastern Australia. A total of seven main prey items were observed and consumed by little penguins. Penguins were observed to consume prey types and use strategies that have not been previously documented. These included consumption of bellowsfish (Macroramphosus scolopax) and other fish species captured sheltering around jellyfish or extracted dead from the tentacles. Chase and handling time varied with prey type and lasted approximately 2 s for most prey. Profitability varied among prey types, with a greater amount of low profitable prey being consumed, suggesting a trade-off between minimizing energetic costs, and increasing capture rates. These results highlight the use of animal-borne video data loggers to further understand the foraging adaptations of important predators in the marine environment.

Global assessment of marine plastic exposure risk for oceanic birds.

Plastic pollution is distributed patchily around the world's oceans. Likewise, marine organisms that are vulnerable to plastic ingestion or entanglement have uneven distributions. Understanding where wildlife encounters plastic is crucial for targeting research and mitigation. Oceanic seabirds, particularly petrels, frequently ingest plastic, are highly threatened, and cover vast distances during foraging and migration. However, the spatial overlap between petrels and plastics is poorly understood. Here we combine marine plastic density estimates with individual movement data for 7137 birds of 77 petrel species to estimate relative exposure risk. We identify high exposure risk areas in the Mediterranean and Black seas, and the northeast Pacific, northwest Pacific, South Atlantic and southwest Indian oceans. Plastic exposure risk varies greatly among species and populations, and between breeding and non-breeding seasons. Exposure risk is disproportionately high for Threatened species. Outside the Mediterranean and Black seas, exposure risk is highest in the high seas and Exclusive Economic Zones (EEZs) of the USA, Japan, and the UK. Birds generally had higher plastic exposure risk outside the EEZ of the country where they breed. We identify conservation and research priorities, and highlight that international collaboration is key to addressing the impacts of marine plastic on wide-ranging species.

A Novel Marine Mammal Coxiella burnetii-Genome Sequencing Identifies a New Genotype with Potential Virulence.

The obligate intracellular bacterial pathogen Coxiella burnetii has been identified in a few species of marine mammals, some of which are showing population declines. It has been hypothesized that C. burnetii in marine mammals is a distinct genotype that varies significantly from the typical terrestrial genotypes. It appears to lack an IS1111. Isolates originating from Australian marine animals have a distinctly non-Australian profile of multiple-locus variable-number tandem-repeat analysis (MLVA). Extracted Coxiella DNA of Australian fur seal placental origin was sequenced using the Novaseq platform. Illumina 150 bp paired-end reads were filtered and trimmed with Trimgalore. The microbial community present in the sequenced genome was evaluated with Kraken and Bracken software using the NCBI database. A phylogenetic analysis was performed using 1131 core genes. Core genes were identified using Panaroo and inputted into Iqtree to determine the maximum-likelihood tree. A second phylogenetic tree was created using Rickettsiella grylii and using seven housekeeping genes. Results were compared with the C. burnetii Nine Mile RSA439 virulent genome. This new Australian marine mammal isolate of Coxiella (PG457) appears to be a novel genotype that lacks IS1111 and has a distinct MLVA signature (ms26, ms27, ms28, ms30, and ms31). The presence of genes for multiple virulence factors appears to give this genotype sufficient pathogenicity for it to be considered a possible causative agent of abortion in Australian fur seals as well as a potential zoonotic risk.

Geographical, temporal, and individual-based differences in the trophic ecology of female Cape fur seals.

Information on resource use and trophic dynamics of marine predators is important for understanding their role in ecosystem functioning and predicting population-level responses to environmental change. Where separate populations experience different local environmental conditions, geographic variability in their foraging ecology is often expected. Within populations, individuals also vary in morphology, physiology, and experience, resulting in specialization in resource use. In this context, isotopic compositions of incrementally grown tissues such as keratinous hairs offer a valuable opportunity to study long-term variation in resource and habitat use. We investigated the trophic ecology of female Cape fur seals (Arctocephalus pusillus pusillus) using carbon and nitrogen isotopic compositions of serially sampled whiskers collected at four breeding sites along the coast of South Africa. Drawing on over 900 isotopic measurements, we assessed geographic variability in isotopic niche width between colonies and the degree of individual specialization. We found slight, but clear geographic differences in isotopic ratios and isotopic niche widths, seemingly related to ecological setting, with niche widths being proportional to the area of available shelf and shelf-slope habitat surrounding the colony. We further identified periodic oscillations in isotopic ratios, which likely reflect temporal patterns in foraging distribution and prey type, linked to shifts in the availability of prey resources and their interaction with constraints on individual females throughout their breeding cycle. Finally, individual specialization indices revealed that each of the study populations contain specialist individuals that utilize only a small subset of the total population niche width. The degree of individual specialization was, however, not consistent across colonies and may reflect an interactive influence between density-dependent effects and habitat heterogeneity. Overall, this study provides important information on the trophic ecology of Cape fur seals breeding in South Africa and highlights the need to consider geographic and individual variability when assessing the foraging ecology of marine predators.

Pacific Gulls (Larus pacificus) as Potential Vectors of Coxiella burnetii in an Australian Fur Seal Breeding Colony.

Recently, Coxiella burnetii has been described as a novel pathogen potentially contributing to decreased pup production in Australian fur seals (AusFS, Arctocephalus pusillus doriferus). Pacific gulls (PGs, Larus pacificus) are known to scavenge AusFS placental material during the fur seal breeding season. It is hypothesized that PGs may act as vectors for this pathogen. In the present study, cloacal swabs, oral swabs and serum were collected from PGs on Kanowna Island (KI, an AusFS breeding colony) and a nearby island, Seal Island (SI), not occupied by pinnipeds. All sample sets were evaluated with qPCR for the com1, htpAB and IS1111 markers. Most oral and cloacal swabs from KI tested positive on both the com1 (94.1%; 88.2%) and htpAB targets (76.5%; 76.5%). Amplification was very low from the SI oral swabs and cloacal swabs. Only the KI serum samples had amplification (17.7% for both com1 and htpAB). There was no IS1111 amplification in either colony. The results demonstrate that PGs can potentially act as vectors for the spread of C. burnetii. In some birds, C. burnetii was detectable in the serum, indicating that gulls can experience bacteraemia. It appears that different feeding strategies in the same species within the same ecosystem can have profound effects on the prevalence of pathogens. Further studies are required to better understand the epidemiology and potential risks of this organism.

Key questions in marine mammal bioenergetics.

Bioenergetic approaches are increasingly used to understand how marine mammal populations could be affected by a changing and disturbed aquatic environment. There remain considerable gaps in our knowledge of marine mammal bioenergetics, which hinder the application of bioenergetic studies to inform policy decisions. We conducted a priority-setting exercise to identify high-priority unanswered questions in marine mammal bioenergetics, with an emphasis on questions relevant to conservation and management. Electronic communication and a virtual workshop were used to solicit and collate potential research questions from the marine mammal bioenergetic community. From a final list of 39 questions, 11 were identified as 'key' questions because they received votes from at least 50% of survey participants. Key questions included those related to energy intake (prey landscapes, exposure to human activities) and expenditure (field metabolic rate, exposure to human activities, lactation, time-activity budgets), energy allocation priorities, metrics of body condition and relationships with survival and reproductive success and extrapolation of data from one species to another. Existing tools to address key questions include labelled water, animal-borne sensors, mark-resight data from long-term research programs, environmental DNA and unmanned vehicles. Further validation of existing approaches and development of new methodologies are needed to comprehensively address some key questions, particularly for cetaceans. The identification of these key questions can provide a guiding framework to set research priorities, which ultimately may yield more accurate information to inform policies and better conserve marine mammal populations.

Stage-dependent niche segregation: insights from a multi-dimensional approach of two sympatric sibling seabirds.

Niche theory predicts that to reduce competition for the same resource, sympatric ecologically similar species should exploit divergent niches and segregate in one or more dimensions. Seasonal variations in environmental conditions and energy requirements can influence the mechanisms and the degree of niche segregation. However, studies have overlooked the multi-dimensional aspect of niche segregation over the whole annual cycle, and key facets of species co-existence still remain ambiguous. The present study provides insights into the niche use and partitioning of two morphologically and ecologically similar seabirds, the common (CDP, Pelecanoides urinatrix) and the South Georgian diving petrel (SGDP, Pelecanoides georgicus). Using phenology, at-sea distribution, diving behavior and isotopic data (during the incubation, chick-rearing and non-breeding periods), we show that the degree of partitioning was highly stage-dependent. During the breeding season, the greater niche segregation during chick-rearing than incubation supported the hypothesis that resource partitioning increases during energetically demanding periods. During the post breeding period, while species-specific latitudinal differences were expected (species specific water mass preference), CDP and SGDP also migrated in divergent directions. This segregation in migration area may not be only a response to the selective pressure arising from competition avoidance between sympatric species, but instead, could reflect past evolutionary divergence. Such stage-dependent and context-dependent niche segregation demonstrates the importance of integrative approaches combining techniques from different fields, throughout the entire annual cycle, to better understand the co-existence of ecologically similar species. This is particularly relevant in order to fully understand the short and long-term effects of ongoing environmental changes on species distributions and communities.This work demonstrates the need of integrative multi-dimensional approaches combining concepts and techniques from different fields to understand the mechanism and causal factors of niche segregation.

Year-round at-sea movements of fairy prions from southeastern Australia.

Effective conservation assessments require detailed information of species' ecological niches during the whole annual cycle. For seabirds, this implies investigating the at-sea distribution and foraging behaviour during both the breeding and non-breeding periods. However, until recently, collecting information about small species has been precluded by the excessive size of the required devices. This lack of knowledge is exacerbated in the case of polytypic genera with species sharing very similar appearance and behaviour, such as the super-abundant prions (Pachyptila spp.). The present study investigates the year-round at-sea distribution and foraging ecology of the fairy prion (Pachyptila turtur) in southeastern Australia. Miniaturized GPS loggers during the breeding season and geolocators (GLS) during the non-breeding period were used over 4 consecutive years (2017-2021), with results that highlight the importance of the continental shelf-edge waters for fairy prions throughout the year. In addition, contrary to previous assumptions, the GLS data revealed an unsuspected post-breeding migration to the waters south of Australia, during which individuals probably undergo a rapid moult of flight feathers. Understanding the at-sea distribution and ecology of prions during the whole annual cycle will be fundamental to their conservation as it can reveal species- or population-specific threats that have been overlooked because of their status as abundant species.

Environmental influences on breeding biology and pup production in Australian fur seals.

Knowledge of factors affecting a species' breeding biology is crucial to understanding how environmental variability impacts population trajectories and enables predictions on how species may respond to global change. The Australian fur seal (Arctocephalus pusillus doriferus, AUFS) represents the largest marine predator biomass in southeastern Australia, an oceanic region experiencing rapid warming that will impact the abundance and distribution of prey. The present study (1997-2020) investigated breeding phenology and pup production in AUFS on Kanowna Island, northern Bass Strait. The pupping period varied by 11 days and the median pupping date by 8 days and were negatively correlated to 1- and 2-year lagged winter zonal winds, respectively, within Bass Strait. While there was no temporal trend over the study period, annual pup production (1386-2574 pups) was negatively correlated to 1-year lagged summer zonal winds in the Bonney Upwelling region and positively correlated to the current-year Southern Oscillation Index (SOI). In addition, a fecundity index (ratio of new-born pups to adult females at the median pupping date) was positively correlated with current-year Southern Annular Mode (SAM) conditions. Periods of positive SOI and positive SAM conditions are forecast to increase in coming decades, suggesting advantageous conditions for the Kanowna Island AUFS population.

Sustained reduction in numbers of Australian fur seal pups: Implications for future population monitoring.

Fur seal populations in the Southern Hemisphere were plundered in the late 1700s and early 1800s to provide fur for a clothing industry. Millions of seals were killed resulting in potentially major ecosystem changes across the Southern Hemisphere, the consequences of which are unknown today. Following more than a century of population suppression, partly through on-going harvesting, many of the fur seal populations started to recover in the late 1900s. Australian fur seals (Arctocephalus pusillus doriferus), one of the most geographically constrained fur seal species, followed this trend. From the 1940s to 1986, pup production remained at approximately 10,000 per year, then significant growth commenced. By 2007, live pup abundance had recovered to approximately 21,400 per year and recovery was expected to continue However, a species-wide survey in 2013 recorded a 20% decline, to approximately 16,500 live pups. It was not known if this decline was due to 2013 being a poor breeding year or a true population reduction. Here we report the results of a population-wide survey conducted in 2017 and annual monitoring at the most productive colony, Seal Rocks, Victoria that recorded a large decline in live pup abundance (-28%). Sustained lower pup numbers at Seal Rocks from annual counts between 2012-2017 (mean = 2908 ± 372 SD), as well as the population-wide estimate of 16,903 live pups in 2017, suggest that the pup numbers for the total population have remained at the lower level observed in 2013 and that the 5-yearly census results are not anomalies or representative of poor breeding seasons. Potential reasons for the decline, which did not occur range-wide but predominantly in the most populated and long-standing breeding sites, are discussed. To enhance adaptive management of this species, methods for future monitoring of the population are also presented. Australian fur seals occupy several distinct regions influenced by different currents and upwellings: range-wide pup abundance monitoring enables comparisons of ecosystem status across these regions. Forces driving change in Australian fur seal pup numbers are likely to play across other marine ecosystems, particularly in the Southern Hemisphere where most fur seals live.

Increasing numbers of killer whale individuals use fisheries as feeding opportunities within subantarctic populations.

Fisheries can generate feeding opportunities for large marine predators in the form of discards or accessible catch. How the use of this anthropogenic food may spread as a new behaviour, across individuals within populations over time, is poorly understood. This study used a 16-year (2003-2018) monitoring of two killer whale Orcinus orca subantarctic populations (regular and Type-D at Crozet), and Bayesian multistate capture-mark-recapture models, to assess temporal changes in the number of individuals feeding on fish caught on hooks ('depredation' behaviour) of a fishery started in 1996. For both populations, the number of depredating individuals increased during the study period (34 to 94 for regular; 17 to 43 for Type-D). Increasing abundance is unlikely to account for this and, rather, the results suggest depredation was acquired by increasing numbers of existing individuals. For regular killer whales, a plateau reached from 2014 suggests that it took 18 years for the behaviour to spread across the whole population. A more recent plateau was apparent for Type-Ds but additional years are needed to confirm this. These findings show how changes in prey availability caused by human activities lead to rapid, yet progressive, innovations in killer whales, likely altering the ecological role of this top-predator.

The cost of a meal: factors influencing prey profitability in Australian fur seals.

Knowledge of the factors shaping the foraging behaviour of species is central to understanding their ecosystem role and predicting their response to environmental variability. To maximise survival and reproduction, foraging strategies must balance the costs and benefits related to energy needed to pursue, manipulate, and consume prey with the nutritional reward obtained. While such information is vital for understanding how changes in prey assemblages may affect predators, determining these components is inherently difficult in cryptic predators. The present study used animal-borne video data loggers to investigate the costs and benefits related to different prey types for female Australian fur seals (Arctocephalus pusillus doriferus), a primarily benthic foraging species in the low productivity Bass Strait, south-eastern Australia. A total of 1,263 prey captures, resulting from 2,027 prey detections, were observed in 84.5 h of video recordings from 23 individuals. Substantial differences in prey pursuit and handling times, gross energy gain and total energy expenditure were observed between prey types. Importantly, the profitability of prey was not significantly different between prey types, with the exception of elasmobranchs. This study highlights the benefit of animal-borne video data loggers for understanding the factors that influence foraging decisions in predators. Further studies incorporating search times for different prey types would further elucidate how profitability differs with prey type.

Temporal and spatial isotopic variability of marine prey species in south-eastern Australia: Potential implications for predator diet studies.

Stable isotope analyses, particularly of carbon (δ13C) and nitrogen (δ15N), are used to investigate ecological relationships among species. For marine predators, research has shown the main factors influencing their intra-specific and intra-individual isotopic variation are geographical movements and changes in the composition of diet over time. However, as the differences seen may be the result of changes in the prey items consumed, a change in feeding location or the combination of both, knowledge of the temporal and spatial consistency in the isotopic values of prey becomes crucial for making accurate inferences about predator diets. This study used an abundant marine predator, the Australasian gannet (Morus serrator), as prey sampler to investigate the annual variation in fish and squid prey isotope values over a four-year period (2012-2015) and the geographic variation between two sites with contrasting oceanographic conditions. Significant inter-annual variation was observed in δ13C and/or δ15N values of five of the eight prey species analysed. The strongest inter-annual variation in both δ13C and δ15N values occurred in 2015, which coincided with a strong El Niño-Southern Oscillation (ENSO). This may suggest a temporal fluctuation in the geographic source of prey or the origin of their nutrients. These results suggest that it is important to consider the potential significant differences in isotopic values within the prey assemblages that predators consume. This is important to improve the interpretation of marine predator isotope results when determining the influence of environmental variability on their diets.

Influence of environmental variation on spatial distribution and habitat-use in a benthic foraging marine predator.

The highly dynamic nature of the marine environment can have a substantial influence on the foraging behaviour and spatial distribution of marine predators, particularly in pelagic marine systems. However, knowledge of the susceptibility of benthic marine predators to environmental variability is limited. This study investigated the influence of local-scale environmental conditions and large-scale climate indices on the spatial distribution and habitat use in the benthic foraging Australian fur seal (Arctocephalus pusillus doriferus; AUFS). Female AUFS provisioning pups were instrumented with GPS or ARGOS platform terminal transmitter tags during the austral winters of 2001-2019 at Kanowna Island, south-eastern Australia. Individuals were most susceptible to changes in the Southern Oscillation Index that measures the strength of the El Niño Southern Oscillation, with larger foraging ranges, greater distances travelled and more dispersed movement associated with 1-yr lagged La Niña-like conditions. Additionally, the total distance travelled was negatively correlated with the current year sea surface temperature and 1-yr lagged Indian Ocean Dipole, and positively correlated with 1-yr lagged chlorophyll-a concentration. These results suggest that environmental variation may influence the spatial distribution and availability of prey, even within benthic marine systems.

Animal lifestyle affects acceptable mass limits for attached tags.

Animal-attached devices have transformed our understanding of vertebrate ecology. To minimize any associated harm, researchers have long advocated that tag masses should not exceed 3% of carrier body mass. However, this ignores tag forces resulting from animal movement. Using data from collar-attached accelerometers on 10 diverse free-ranging terrestrial species from koalas to cheetahs, we detail a tag-based acceleration method to clarify acceptable tag mass limits. We quantify animal athleticism in terms of fractions of animal movement time devoted to different collar-recorded accelerations and convert those accelerations to forces (acceleration × tag mass) to allow derivation of any defined force limits for specified fractions of any animal's active time. Specifying that tags should exert forces that are less than 3% of the gravitational force exerted on the animal's body for 95% of the time led to corrected tag masses that should constitute between 1.6% and 2.98% of carrier mass, depending on athleticism. Strikingly, in four carnivore species encompassing two orders of magnitude in mass (ca 2-200 kg), forces exerted by '3%' tags were equivalent to 4-19% of carrier body mass during moving, with a maximum of 54% in a hunting cheetah. This fundamentally changes how acceptable tag mass limits should be determined by ethics bodies, irrespective of the force and time limits specified.

Contrasting impacts of environmental variability on the breeding biology of two sympatric small procellariiform seabirds in south-eastern Australia.

Seabirds play a vital role in marine ecosystems and the long-term study of their responses to environmental variations can be used to monitor the effects of climate change on marine fauna. However, slight differences in similar seabird species result in a range of responses which complicates our understanding of the effects of environmental changes to marine ecosystems. The present study investigated inter-annual differences in the breeding biology (breeding phenology, chick growth rates and breeding success) and environmental conditions (seasonal sea surface temperatures) of important foraging areas in two sympatric small Procellariiform species, the fairy prion (Pachyptila turtur) and the common diving petrel (Pelecanoides urinatrix), over four reproductive seasons (2017-2020) in Bass Strait, south-eastern Australia. Marine heatwaves occurred during the years of 2018/19 and 2019/20 and coincided with years of delayed laying dates, slower chick growth and reduced breeding success, in both species. While fairy prions maintained a relatively high breeding success and broadly constant breeding phenology, common diving petrels delayed the start of the breeding season by up to 50 days and experienced dramatic collapses in breeding success in years of high marine heat wave occurrence. The difference in foraging ecology and physiological capacity (largely in the production of stomach oils and fasting abilities of adults and chicks) between both species are likely to influence the variability and phenology in the observed breeding seasons.